Detailed information of SNP:
|
SNP ID:
sf1227185856(Gbrowse)
Chromosome: chr12 Position: 27185856 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1368 | 64.91% | 35.09% |
| All Indica | 790 | 74.43% | 25.57% |
| All Japonica | 457 | 42.45% | 57.55% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 368 | 57.61% | 42.39% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 209 | 84.69% | 15.31% |
| Temperate Japonica | 316 | 47.47% | 52.53% |
| Tropical Japonica | 78 | 38.46% | 61.54% |
| Japonica Intermediate | 63 | 22.22% | 77.78% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1227185856 | C->T | INTERGENIC | None |