Detailed information of SNP:
|
SNP ID:
sf1227191552(Gbrowse)
Chromosome: chr12 Position: 27191552 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 97.52% | 2.48% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 497 | 94.16% | 5.84% |
| Aus | 60 | 96.67% | 3.33% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 74.47% | 25.53% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1227191552 | C->T | LOC_Os12g43850(LOC_Os12g43850.1) | SNPs that introduce stop codons |