Detailed information of SNP:
SNP ID:
sf1227289457(Gbrowse)
Chromosome: chr12 Position: 27289457 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1418 | 78.00% | 22.00% |
All Indica | 798 | 62.41% | 37.59% |
All Japonica | 497 | 99.60% | 0.40% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 81.33% | 18.67% |
Indica II | 212 | 30.66% | 69.34% |
Indica Intermediate | 211 | 60.66% | 39.34% |
Temperate Japonica | 335 | 99.70% | 0.30% |
Tropical Japonica | 94 | 100.00% | 0.00% |
Japonica Intermediate | 68 | 98.53% | 1.47% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1227289457 | G->A | INTERGENIC | None |