Detailed information of SNP:
|
SNP ID:
sf1227324045(Gbrowse)
Chromosome: chr12 Position: 27324045 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 77.22% | 22.78% |
| All Indica | 798 | 66.29% | 33.71% |
| All Japonica | 497 | 91.15% | 8.85% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 77.33% | 22.67% |
| Indica II | 213 | 72.30% | 27.70% |
| Indica Intermediate | 210 | 40.48% | 59.52% |
| Temperate Japonica | 335 | 87.76% | 12.24% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1227324045 | T->A | INTERGENIC | None |