Detailed information of SNP:
|
SNP ID:
sf1227353185(Gbrowse)
Chromosome: chr12 Position: 27353185 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 60.99% | 39.01% |
| All Indica | 798 | 98.50% | 1.50% |
| All Japonica | 493 | 1.01% | 98.99% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 212 | 97.64% | 2.36% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 334 | 0.60% | 99.40% |
| Tropical Japonica | 93 | 0.00% | 100.00% |
| Japonica Intermediate | 66 | 4.55% | 95.45% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 38 | 63.16% | 36.84% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1227353185 | A->G | INTERGENIC | None |