Detailed information of SNP:
|
SNP ID:
sf1227370400(Gbrowse)
Chromosome: chr12 Position: 27370400 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 93.85% | 6.15% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 493 | 84.18% | 15.82% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 333 | 94.29% | 5.71% |
| Tropical Japonica | 94 | 41.49% | 58.51% |
| Japonica Intermediate | 66 | 93.94% | 6.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1227370400 | C->T | INTERGENIC | None |