Detailed information of SNP:
|
SNP ID:
sf1227417863(Gbrowse)
Chromosome: chr12 Position: 27417863 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1403 | 97.08% | 2.92% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 481 | 93.76% | 6.24% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 324 | 96.30% | 3.70% |
| Tropical Japonica | 91 | 92.31% | 7.69% |
| Japonica Intermediate | 66 | 83.33% | 16.67% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1227417863 | A->G | LOC_Os12g44290(LOC_Os12g44290.1) | Non-Synonymous SNP |