Detailed information of SNP:
|
SNP ID:
sf1227429910(Gbrowse)
Chromosome: chr12 Position: 27429910 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 58.18% | 41.82% |
| All Indica | 799 | 99.25% | 0.75% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1227429910 | G->A | LOC_Os12g44300(LOC_Os12g44300.1) | Synonymous |