Results:
8 results found. Your gene id is LOC_Os01g39670, from 22374530 to 22376515. Upstream: 0 kb, downstream: 0 kb.
Haplotype Network Analysis:
This plot is generated using functions in R package pegas with some modifications. Only haplotypes found in ≥10 rice accessions were used to construct the haplotype network. The detailed haplotype information could be downloaded from here. The SVG format of the plot could be downloaded from here. You may go to Haplotype Network Analysis page to do more analysis.
Detailed SNP Information:
Note: SNPs are highligted when they have 'big' effect.
| SNP ID | Chromosome | Position | Major Allele | Minor Allele | Frequency of Major Allele | Var | Effect |
|---|---|---|---|---|---|---|---|
| sf0122374902(G,I) | chr01 | 22374902 | C | T | 95.91% | C->T | LOC_Os01g39670.1 SNPs that introduce stop codons |
| sf0122375383(G,I) | chr01 | 22375383 | G | A | 99.58% | G->A | LOC_Os01g39670.1 Non-Synonymous SNP |
| sf0122375389(G,I) | chr01 | 22375389 | T | C | 57.55% | C->T | LOC_Os01g39670.1 Non-Synonymous SNP |
| sf0122375600(G,I) | chr01 | 22375600 | G | A | 99.22% | G->A | LOC_Os01g39670.1 Non-Synonymous SNP |
| sf0122376228(G,I) | chr01 | 22376228 | A | G | 55.23% | A->G | LOC_Os01g39670.1 Non-Synonymous SNP |
| sf0122376317(G,I) | chr01 | 22376317 | A | C | 55.27% | A->C | LOC_Os01g39670.1 UTR_3_PRIME |
| sf0122376334(G,I) | chr01 | 22376334 | A | C | 55.19% | A->C | LOC_Os01g39670.1 UTR_3_PRIME |
| sf0122376442(G,I) | chr01 | 22376442 | T | C | 57.87% | C->T | LOC_Os01g39670.1 UTR_3_PRIME |